Exactly!I enjoy a good "you're playing the game wrong!" retort as much as the next guy, but OP's complaint is valid and correct and good. I am glad to see board flipping gone because now people will have no workarounds for dealing with the sorry state of the mission system, and thus no choice but to petition Frontier for improvements.
I think the mission server they've done now is the right way to go. Next step is to improve on it, and it can only be done by players petition for changes. Also, with the new BGS system, we have to play it for a while to see where it's going. They might have done improvements already but they're not visible yet. I can only refer to my experiences before the update.
The thing is, I suspect some of the fixes I'd like to see weren't even possible to do in the old system. Single server for missions might be what's needed to actually get it all done right.