Ruins puzzle not resetting

So even with leaving, changing groups, etc, the pillars that you need to shoot no longer pop up. I was only able to "solve" it 4 times. Is this normal? Because the thought of going to a different site for 4 goes is....scary.

On a side note, does each scan give a random blueprint?
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I noticed that sometimes I had to go to the pillar nearest to the place that gives the blueprint for "activate" the site, the other pillars would then start rising when I drove near them.
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