So if a Minor Empire Faction that is present in like 100 systems eg Patron's Principle triggers a Civil War every system with that faction has a Civil War going? That's odd
No. Civil Wars are station specific. The system with the station in it will have conflict zones.
But the faction will have the state "Civil War" in 100 systems.
Until this is changed, I hardly think a faction can spread across 100 star systems. Because the states and their cooldowns will get in the way. There will always be some civil war somewhere and the cooldown will be always triggered.
My question was pointing to a possible "jetlag" from a civil war. There was some unexplainable stagnation of influence after a civil war in Lugh from the saturday before launch for a week or so.
Or maybe the influence queue for the system isn't being processed correctly. This can only be analyzed by Frontier.
So your best bet is collecting evidence and contacting them politely via multiple channels. Tickets (you already raised them) or this thread or Forum PM. Choose one person as spokesman and let them do the contacting, because spamming is probably counterproductive.
Sketch out how many people you are, how many missions you have done, etc. Bring up some evidence. Keep this thread on the front page. And then hope for an answer.