cargo scoops, landing gear

What, if any, are the benefits, or are there draw backs to leaving your scoops and landing gear open/down?

Other than Frame shift not working, is there any flight benefits to closing them? Are you more maneuverable with all gear stowed?
 
There was some speculation, although nothing confirmed, that you might take more damage or certain modules were more vulnerable with gear down, cargo bay open.
 
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