Hm...This is obviously great work for the community, thank you. The problem is the 'right' way to get materials in this game, as per your spreadsheet, isn't the most efficient way. The best guide anyone can write at the moment (and it's mercifully short I don't need to copy paste it, I can type it every time) is the following...
Data:
Go to the Jameson Cobra and hit the 4 nodes, logout, login and repeat. This is so fast it's hilarious. You fill your adaptive encryptor captures in 10 mins even if you're slow, then go trade them and repeat. This beats any targeted method of data gathering, by miles.
Raw:
As per your guide, the bio shard sites are the way to go, except they don't produce selenium, as you noted. The best way to get selenium is to do the old style prospecting on Prthi 2A, and hit all the rocks you come across.
Manufactured:
Until FD fixes the states system which is currently not working (for example, in an independent system in Outbreak state, you can get an Outbreak HGE, which should contain pharmaceutical isolators, but it doesn't, it contains CDCs, a Federal superpower item, simply because there exists a fed factoin in the system. Similarly, we are seeing the rare materials from the wrong HGE states as well.
The best way to farm any manufactured material currently is to go to the core of imperial space and farm for imperial shielding, because it doesn't share its loot pool with anything else (as CDCs do with prop comps, for example), so you can once again fill your imp shielding really fast and then go trade.
This doesn't invalidate your guide for people who want to do it the proper way, but it's worth mentioning that the state of the game currently means that these shortcuts are much better for one's overall enjoyment of engineering. Once again, thanks for the effort. We (GARD) have a HUGE raw materials gathering guide to bubble systems on our private forum, compiled by cosmicspacehead from data we've collected since 3.3 dropped, which I would be happy to share with you to pad out your non bio raw sites. You should also add a field of the reserves state (pristine, etc) of the system, as this affects the ratio of needle crystals to lower level mats, and dramatically affects the chances of finding metallic meteorites when doing the old style prospecting.