Does killing wanted ships of the controlling faction still lower their influence or do you have to target clean ships? I'm just doing some bounty hunting but I don't want the factions influence to go down, I'm only killing wanted ones.
I understand that the influence might have a trivial decrease when you kill a faction's wanted ships. But if the faction is the controlling faction you get a significant increase in influence when you turn in the bounties in that system.
Watch out with killing clean ships. That can lead to lock down.