Thx for the responses, i've managed to get it work now. Its awesome!
I dont know why i had this problem, and i dont know why its suddenly working, but this is what i did if anyone gets the same problem:
Went to controls in the paus meny. Set to preset empty with both tracker and joystick connected. Then set to preset generic joystick. I tried the game this way and elite thought the tracker was my joystick. Then i re-mapped the headlook to tracker. Then re-mapp all joystickmovements including all buttons. Then it worked. I have an old joystick (10+ Years old) dont know if thats the cause.