How do I avoid Thargoids?

You need to be able to boost above 400m/s. The farther above that, the more quickly you can make distance, obviously. Anything slower than that and good luck crawling out of the mass lock. Try high-waking, but that may just get you intercepted.
 
Actually, they don't care about fittings

I was actually curious about how they'd react to the new Guardian tech on board our ships, to be honest I think it'd make sense if they saw remnants of Guardian tech (even if merged with human) and were extra hostile.

It'd make perfect sense.

Trundling through Goid territory with a shiny new Guardian PP but no weapons?
"Dis bish thank he tuff!" *Alien Palpatines you*
 
I got hyperdicted twice while doing a Palin mission, in a Cobra loaded with Thargoid Resin. I put 4 pips in ENG, full throttle and boost (maybe even a second time it all happened so fast I can't be sure) before the shut down field hit me. I think that having a boost speed in excess of 500 m/s put me far enough away that I didn't get scanned.
 
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