At the very least you should be able to ignore them if you have missile defense fitted to your ship, as fitting one of them greatly reduces the 'risk' associated with a missile.
You may be able to shoot them when they are first fired but once they bug out at 5km they become stationary and invulnarable to weapons fire and ramming.
Weird...I've never targeted a missile when pressing the next hostile target button on my HOTAS. Even in the thickest CZs. Am I the victim of a fortunate bug?
Same for me. Missiles only get targeted when I hit "Select Highest Threat" but not on "Cycle Next Target". Fortunately!
However, I'd also prefer if "Select Highest Threat" would ignore missiles, too. Or if it was toggleable. Or if we could assign a dedicated key to "Select Closest Hostile Missile"...
Weird...I've never targeted a missile when pressing the next hostile target button on my HOTAS. Even in the thickest CZs. Am I the victim of a fortunate bug?