For tracking factions in multiple systems, you may want to try third party applications such as
I do like some of the 3rd party tools, but it's still my preference to use in-game tools when available. I created a Squadron specifically with this in mind, along with the ability to "pledge" to a minor faction, something I've always wanted to do since I first bought the game. It's too bad players can't do this outside of a Squadron, but then again, if more than one player wants to support a specific minor faction, I see how uniting under a common flag makes sense.
I don't mind being a Squadron of one, though I will invite some of my more trusted friends to join in case they too want to try some casual BGS for a small, neglected faction. "Casual" is the key word, as I really don't have the time to manage Discord and Inara and all these other 3rd party tools out there just to play a game during my recreation time. Otherwise ED becomes a second job, LOL. And unlike everyone else, I'm very happy with the tools that Squadrons give me in the game.
Anyway, thanks for your reply!