A few things
Having your stored ships transported to another system for a fee CR/LY. Which could also generate ship transporter missions for CMDRs with ships that are big enough to carry them out. General ship transport missions for factions could also be created.
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For example, a Type 9 with 500T capacity could carry 35 Haulers, 20 Sidewinders, 14 Adders, 10 Eagles, 8 Vipers or 2 Cobras based on the Max hull weight of each ship not its size. Ships would be partially dismantled for transport to take up a more uniform space inside the transporter (this way, even a Type 6 with 100T capacity could transport a Viper). Depending on how much cargo the proposed Panther Clipper is made to carry, it might be the one for transporting the larger vessels.
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How this could work: A CMDR requests a ship to be transported. an NPC mission is created to do the actual job while a bulletin board mission for the same journey is created for a CMDR to take. The mission could be posted at the storage station for any length of time as it has no actual bearing on the NPC mission. The mission time should be a reasonable length based on the economic route between the two systems (the requester would have been told the same amount at the time of the request). This is to encourage the pilot to do the job with priority and so prevent them from meandering around wasting time with someone else's precious ship on board.
Failure to complete the mission would mean a fine for breach of contract and a rep hit at originating storage station (the mission is essentially from the station as it is acting as an agent for the originating CMDR) and/or the cargo being turned into *STOLEN* scrap incurring the added difficulty of disposing of it at a station and an extra fine for illegal dumping if they try to eject it.
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Having two separate missions ensures the originating CMDR get his ship regardless of whether the bulletin board mission is picked up. But if it is, what the transporting CMDR does or doesn't do with it will not impact on the other CMDR.
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Escort missions (also as a by product of above) Excuse me if they exist already, I've not seen any.
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Ability to change the HUD colour (orange is really starting to grate!).
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That's all for now
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Cheers
Colin