Am I bothered?
Yes.
The law of conservation of energy bothers me here. The universe was created with a certain amount of energy, so the theory goes. The law applies to isolated systems of which the observable Universe is one example. So, to paraphrase Amigacooke, is the Universe part of another system where the energy given to the Universe on creation was taken from?
I have a headache.
Conservation of energy is a funny thing in general relativity. In particular the inflaton field (and present day dark energy, if both are things at all) superficially look like energy isn't conserved. They stay at constant density no matter what volume you put them in.
Normally if you have a piston of gas for example, and you push on that piston you compress that gas. You think that the amount of matter in that gas has stayed the same (and being in a smaller volume its density has gone up) but if you think about it you had to push on that piston to compress the gas, and the energy you expended to do that has gone into the gas, so the amount of matter has gone up in a way (E=mc
2 and all that) and the density is a little bit higher than you expect. With something like the inflaton field, it has a negative rather than positive pressure and rather than you doing work to compress it, you get energy out for compressing it. And the amount you get out is such that the density stays the same. Equally if you expanded the volume it had you'd have to do work and it again would keep the same density.
Now an immediately obvious tricky issue is that if you put something like that throughout the universe and make the universe bigger, it's not clear what is doing the work to keep the density the same - there's no outside wall to push or pull against. So there isn't really anything, but it
does still keep the same density as the universe expands. So you have an expanding universe with a field like that in and it gets bigger and the total amount of stuff in it has gone up. And then you turn all that weird stuff into ordinary matter and energy and suddenly you've got a whole load of it...
So what's going on with the conservation of energy? Well one way to look at it is through
Noether's theorem. Noether figured out that if you can express a symmetry about the universe (so that something looks the same when viewed from a different perspective) you can calculate an associated quantity that is conserved. In this case, the conservation of energy is in a sense a result of the fact that the laws of physics don't change with time. They'll be the same tomorrow as today, and were the same yesterday. The equivalent for the laws of physics being the same over there as over here gives you conservation of momentum. Unfortunately, the universe is actually a dynamic place and space and time are not fixed, so the background the laws of physics are supposed to be working in are changing. This means energy isn't conserved, or at best that you have to rethink how you're going to calculate it in order to keep it conserved.
So you can either take the view that energy isn't actually conserved, or you can take the view that the energy has been accounted for by some other balancing of the books elsewhere (bundling it under the name of gravitational energy), and figuring out how that's done and if it can be done is not trivial, and it's perhaps not going to lead you to any significantly better understanding. Which is unfortunate, and indeed having a headache is probably the most appropriate response to the situation even if it's not the most productive.
A few links:
http://math.ucr.edu/home/baez/physics/Relativity/GR/energy_gr.html
http://www.preposterousuniverse.com/blog/2010/02/22/energy-is-not-conserved/
http://preposterousuniverse.blogspot.co.uk/2004/05/energy-and-intelligence.html