crossposted from your reddit thread
Most likely they would have to re-model some aspects of animations we see. The Eagle, Imperial Eagle, and Imperial Courier all had to have their landing gear extended to allow for an SRV to deploy downwards from the cargo hatch. I'm not sure how many other ships needed to do this as well.
The funny thing is that the Imperial Courier has a rear ramp between the two thrusters, and it might be wide enough to deploy and SRV. The Imperial Clipper's definitely is.
I'm not sure if the Imperial Eagle was intended to deploy an SRV, but my guess is Gutamaya ships were intended to have an alternate means of deploying SRVs in a 'fancy' or elaborate manner. (Hell, there might even be a secretive Gutamaya version of the SRV, that the never finished developing.)
So my assumption is that the way the original internal schematics work do not currently jive with the 'measurements' and diagrams of the internal compartments as they exist right now, and they definitely don't fit with the animations as they exist right now.
(Have you tried deploying a huge plasma accelerator from a Fer-de-Lance in the hangar? Oh my gods the clipping?)
So your best option is to guess from the outside and through the windows. Personally, I believe the Cutter has an armoured bridge, gunnery control, fleet command, or VIP observation deck
just behind the large dorsal hardpoints. (The gunnery station guess was pre-multi-crew.)
Theory crafting is fun.