Just one niggly little point - there's a common misapprehension that 'dark' stuff is some kind of fudge factor...
it isn't - rather, it's an inference, from an anomalous measurement; that is, one that doesn't conform to expectation. An inconsistency between observation and theory.
So in the case of dark matter, it's not some hypothetical entity invoked to fill the gaps, but rather a discrepancy between expected and measured values - star systems follow Kepler's laws, but galaxies apparently don't - and worse, some inexplicably moreso that others... so it's not even a particularly predictable anomaly.
So these are facts, not theories.
The hypotheses come in to play in trying to tie up these loose ends - is dark matter an actual form of matter, such as WIMPS, MACHOS or HALOs etc. etc. or is it a failure of classical laws at cosmological scales, requiring something like MOND to make sense of (has shown some predictive success just in the last week)..?
Dark energy, dark flow et al are likewise observed deficits in current models, not speculative tacked-on afterthoughts to milk academic funding, or something... their whole point of interest is precisely because they're the big questions at the cutting edge of cosmology - the limits of current knowledge.
Whichever prospective theories win out, it'll be because they better explain observations, and make accurate predictions for future measurements. Or, as DigitalDuck put it (top posts BTW), they're "known unknowns"...