A few options - it's something I'm interested to see how they manage it, too.
The smoothest way under powered flight might be to fly in along the centre of the cylinder until you were "above" the pad, then turn to fly a widening spiral around the cylinder, slowing increasing your angular speed and radius so that when you touched down on the pad your relative velocity with respect to it was near-zero. Getting the thrust right to do that would be very tricky, though - autopilot only, or very practised manual pilots. It'd make the original Elite's docking look very easy indeed.
Safer would be to have the docking pads on their own rings, which could be spun up or down independently of the main station body: spin down for takeoff and landing, then once you're safely docked and locked, spin back up for microgravity to resynchronise with the station rotation. Or perhaps have clamps on the axis of rotation that you can fly into and be locked, just needing the relatively easy task of matching rotation, then dragged on rails down to the docking pad.
Alternatively again, if the station is large, and the docking corridor relatively small compared with the station, the linear velocity of the docking pad isn't going to be very big anyway, so some decent landing gear will be able to absorb the velocity you get as you land, so long as you don't land sideways to the rotation.