The reason that a feather and a two ton weight hit the floor at the same time from the same height in space, compared to dropping them on earth is not about the differences in mass. On Earth if you do that the two ton weight will hit the ground first because of the way the feather is shaped and the way it interacts with the atmosphere. If you were to drop a two ton weight and a two gram weight, they would both hit the ground at the same time, whether you did this in space or on Earth. However if you wanted to move a two ton weight it would take more energy than it would to move a two gram weight. This is the same in space as it is on Earth. Think of an ocean liner vs a dingy. If you were to push against a dingy you would find it very easy to push away. Try doing the same with an ocean liner and it would not budge. You would need more energy to move the ocean liner than the energy you would need to move the dingy.
this is only due to to the friction provided by the water..
a 2 ton car with no wheels or hubs sat on the floor would be immovable due to friction. But put some wheels on it and with some effort you can push it.
A 3 ton ship on land would not be pushed by you at all. but put it in water and buoyancy effectively lightens it meaning that with some effort you can move it. You have to use more effort to move than a smaller object due to it having a greater resistance with the water, as the force of it pushing down is exerted back against it.
Now in space a mass is effectively weightless the only gravity acting upon it is produced by its self. Any amount of thrust that is capable of moving it even the smallest amount provided it is continually applied will continue to accelerate and propel the mass.
there is no "big rocket makes it go faster than little rocket equation" regardless of the size of propulsion provided that it is enough to move it even the slightest bit (so little that you would not even notice looking at it) it will continue to accelerate exponentially as long as that propulsion is constantly applied.
the only issue there is after that is stopping the thing.
that is where mass becomes a big thing.. Stopping a large mass is MUCH more difficult than propelling it.
Acceleration of the masses of these ships should be the same given the difference in thrusters on them. and even if they used the same thrusters they would be close to identical being of so little mass.
the top speeds would also be identical.
the only thing that would change is how much energy would have to be used to stop the things after they reached terminal velocity.