I don't really see how there might be a conflict.
It's not like the scoop and the FSD are competing for the same slot in a ship.
If it's a ship which has the primary purpose of travelling, I always use the biggest slot the ship has for the best scoop I can afford.
If it's a multi-role ship I'll use one of the mid-size slots for a scoop.
In a combat ship, I'll fit a scoop in whatever small slot remains after I've finished adding anything else, just as a "get you home" in case of unforeseen circumstances (such as an emergency high-wake to another system).
It's not like the scoop and the FSD are competing for the same slot in a ship.
If it's a ship which has the primary purpose of travelling, I always use the biggest slot the ship has for the best scoop I can afford.
If it's a multi-role ship I'll use one of the mid-size slots for a scoop.
In a combat ship, I'll fit a scoop in whatever small slot remains after I've finished adding anything else, just as a "get you home" in case of unforeseen circumstances (such as an emergency high-wake to another system).
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