Not sure how this is for people with complex HOTAS set ups (using an XBox controller on PC myself) but the bindings were not an issue at all for me, the only thing that bugged me was the different exit button and they addressed that.
And you can still check whether a system has whatever types of planets instantly by reviewing the frequency band. In fact I would say it's easier now because you don't have to listen to the sounds (water/earth) or zoom in on the system map, or check the holograph for clues. Honk, open FSS, check if any objects are in the relevant bandwidth, if yes, find them (which takes less time than actually going there via SC).
And if you enjoyed spending minutes sitting in SC waiting for a number to count down, fair enough - during those moments I usually question whether I make the best use of my free time doing so.
Edit - and on your last point, well I'm actually happy Elite doesn't have more story content. Quite like the blaze-my-own-trail approach, and the older I get the less satisfaction I get from game stories - if I want a good story I usually just watch a movie or read a book.