So kind of on topic... In the ball park? As a result of me being allied to many law abiding, imperial factions, the less legally conscious ones have turned unfriendly. I love the "do your business and leave" greeting. Is hostile next? I take it I will loose docking privileges? Shot at?
I don't think there need to be a connection between being allied to law abiding factions and the unfriendliness of the piraty ones.
I am friendly with a whole bunch of imperials due to my rank climbing, but I am also allied to a pirate/smuggler faction.
I do lot of smuggling in the anarchy system of my allies but do my bounty hunting elsewhere, and I try to avoid killing friendlies/allies and have not seen much conflicts.
I will have to check if I am getting better fuel/equipment prices. If that is the case I will start working on sucking up to a high-tech faction with good outfitting services.