Something similar happened to me, where i had 9 VA voice cmds not working, plus of course the new binds for the new stuff. Would go into ED bindings and could clearly see that there where keyboard binds for these cmds, but VA would not them us them. Went into the missing keybinds report in the customise panel in VA and saw that i had in fact 21 missing keybinds inc the new ones, which was strange as the day before they were working!
Then saw for some reason ED was using the wrong keybinds file, it had created a new one with all but the missing 21 keybinds copied over. Strange it is. So changed the keybinds in ED, inputted the new ones and hey hey all worked fine.
This may or maynot be releated to your issue, but you could run the missing keybinds in the VA customiser and find out what keybinds VA is using and then tally that up with the one ED is using!