My guess would be a problem with automatic brakes (the thing that causes the speed bleed-off above your top speed). Perhaps with F/A on it's applied once you've reached the top boost speed and with F/A off it's applied immediately after exceeding the normal top speed.
Or your max thrust in F/A on isn't applied 100% in the first place (have you tried measuring the speeds from stand-still?)
Or you're not actually going
completely straight forward. It's impossible to get a completely precise vector with F/A off due to lack of any kind of instrumentation.
Ultimately, I'm afraid it could be one of those things in Elite that you try to get to the bottom of, only to give up eventually and think "Oh well, it is what it is"
