Sry for replying without reading through the whole thread but just want to throw my thought into it.
As this aims to be an openended sandbox game with great player freedom, there will (and for the sake of tension SHOULD) be situations where someone in a weak position gets used by others in a strong position.
Withouth it, theres no excitement in surviving, turning the tide and eventually outmaneuver and destroy a sneaking assailant!
This game ia meant to be about taking risks, dangerous is even in its name, and its suppose to be dangerous!
That said, there are still alot of work to be done in making it viable and playable even for first time players. Mindlessly murdering clean vivilians must have bigger consequences!
And finally, this is beta and that gives rise to behaviour you are likely NOT to see in the final release, simply because there are little to no consequences to your actions right now. It will all be wiped at least once, probably more before release!
Dont despair, take a break or practice in private until game mechanics are fleshed out some, the system WILL work in the end

(unless your a rebel scum!!)