As for them having weapons and modules not available to the average Commander, well of course they do. Our military and police currently have weapons and gadgets that aren't available to the man or woman on the street, why should the 34th Century be any different.
I think the Elite concept of the power of the modded lone spacer is a bit more like Millennium Falcon > Empire Equivalent.
That said, personally I have no problem with the idea that law enforcement / military are more powerful than us, otherwise we'd be like emperors of any Independent system we're in. The regular faction cops are so pitiful that we'd be making the laws.
I have to say, though, that the current implementation is rather weird:
Regular police = helpless.
Military = helpless.
Federal Corvette in CZ = helpless.
Imperial Cutter in CZ = helpless.
SWAT team = magic weapons.
I think the whole thing could be made a mite more consistent and credible than that ... work in progress, I hope.
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