To be really picky, this isn't always true - there have been a few cases where systems have had a station and population but no nav beacon, at least temporarily - a couple of the ones around Colonia did, early on. (This was before nav beacons got an actual use for relaying system data, though)It's not really made up. That's what happens in game.
Before a system gets colonised there is no nav beacon.
As soon as the first station is build a nav beacon gets placed.