Agreed. It's meant as a substitute for compelling gameplay.
What they should have done was make total pips shareable between the helm and the gunner. Helm can loan as many pips as he wants to his gunner, gunner (due to having elevated tactical awareness) can throw pips to SYS when under fire, pips to WEPS when trying to land a broadside barrage, pips to ENG whenever the pilot needs them, etc...
Allowing the helm to allocate pip management like that would allow us to optimize different builts and different team makeups. Just making it a bonus pip per crew removes most of that potential for teamwork, which goes against the point of the update.
repped. Maybe add a limit of some kind if you get a problem with complainers, but I think it should be pretty much shared control. If someone's not playing well and won't listen to the helm, you can kick them.