Supercruising into a permit locked region won't do anything, I can assure you.Though having said that, there might have been a stealth change, and we can never be 100% sure until someone tries it after a release!
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Tempted to try it out, since im just at the edge of such said zones, mapping the systems around it, so i could easily stear my ship in the direction after i passed the last planet of the system im in and let the ship fly towards the closest star that is in the permit locked area to see if it actually get there or gets blown up, diverted elsewhere or stopped dead in space...
Since i didnt saw anything about it here on the forums im left wondering if it has been tried and what results came out of it.